Core Analysis Full Data Report

Core Analysis is our comprehensive data delivery platform. You’ll not only get sequence data, but also taxonomic and functional profiles and comparative plots delivered with every project.

Explore Data via Our Interactive Data Report

Every CoreBiome project comes with our extensive Core Analysis informatics report.

For BenchMark™, BoosterShot™ and DeepSeq projects that includes finely tuned quality control and filtering, species and function tables, alpha-diversity and beta-diversity estimates and interactive plots. For StrainView™ projects this includes annotated draft genome assemblies, inferred taxonomy and comparative genomic analyses.

You get back everything from raw and filtered sequencing data in fasta and fastq format to final strain and gene tables in an interactive report for exploring your data.

The Core Analysis report contains:



BenchMark™ Core Analysis Includes:

  • Taxonomic assignments via fully optimal gapped DNA sequence alignment to a curated reference database
  • Functional predictions (16S) via alignment to a curated reference database
  • Sequencing quality-control dashboard
  • Interactive visualizations that leverage your sample metadata
  • Fastqs: adaptor-trimmed and quality-filtered sequencing data
  • Fasta: trimmed, stitched and combined DNA sequences in QIIME-ready

Review example report.


BoosterShot™ and DeepSeq Core Analysis Includes:

  • Strain-level and species-level taxonomic assignments via fully-optimal gapped
    DNA sequence alignment to a curated reference database
  • Direct functional profiling via alignment to a curated reference database, reported
    as KEGG orthology groups, modules, and pathways
  • Strain coverage tables
  • Sequencing quality-control dashboard
  • Interactive visualizations that leverage your sample metadata
  • Fastqs: adaptor-trimmed and quality-filtered sequencing data
  • Fasta: trimmed and combined DNA sequences in QIIME-ready format

Review example report.​


StrainView™ Core Analysis Includes:

  • Genome annotations
  • Taxonomic assignments via fully optimal gapped DNA sequence alignment to a
    curated reference database
  • Antimicrobial resistance profiles
  • Virulence factor profiles
  • Sequencing quality-control dashboard
  • Interactive assembly report
  • Interactive visualizations that leverage your sample metadata
  • Fastqs: adaptor-trimmed and quality-filtered sequencing data
  • Contigs & Scaffolds

Review example report.

Review example reports for ​BoosterShot™​, ​BenchMark™, ​and ​StrainView™.  

The Core Analysis report is included with every microbiome sequencing project at no additional cost. If you have externally generated data in .fastq format we can also create Core Analysis reports for you using our validated pipeline.

Request a quote​ to find out how CoreBiome can help you achieve your scientific goals using:

The standard turnaround time for data reporting for BoosterShot™, BenchMark™, or StrainView™ projects is three weeks. The 90 days are calculated from the day samples arrive at CoreBiome.

Large projects beyond 1,000 samples or those with ultra-deep sequencing may require additional time.

What if I need more?

Your Core Analysis report includes useful tools for exploring high-level trends in your data using beta diversity, alpha diversity, taxonomic, and functional profiles.

If you provide CoreBiome with metadata linked to your samples within our electronic sample submission form, we will include those metadata in the 3D beta diversity visualization.

The standard Core Analysis report does not include hypothesis testing, biomarker discovery, or other custom analysis, although we do offer full-service bioinformatics consulting via our CorePlus Analysis service.

Please contact our microbiome scientists if you are interested in learning about our custom data visualization, biomarker discovery, and machine learning capabilities; or for an exact turnaround time for your project.

CoreBiome provides services and generates data for research purposes only.

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